PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5226_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 191aa    MW: 21920.5 Da    PI: 6.1448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5226_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-1859108355
                                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y GVr ++ +g+++AeIrd + ng   r++lg+f+t+eeAa a+++a+++++g
  cra_locus_5226_iso_1_len_1034_ver_3  59 YIGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFDTEEEAALAYDQAALSMRG 108
                                          89******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.9E-3658122IPR001471AP2/ERF domain
PROSITE profilePS5103222.33958116IPR001471AP2/ERF domain
CDDcd000189.09E-3059116No hitNo description
PfamPF008479.6E-1459108IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2259117IPR016177DNA-binding domain
PRINTSPR003672.0E-95970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3059117IPR001471AP2/ERF domain
PRINTSPR003672.0E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDFSYIDYNS PSSSTSQDFD HHFYFTYNDD QEIKSKEPEE ELIFTITKSP QEKKKKGSYI  60
GVRKRPWGKY AAEIRDSTRN GMRVWLGTFD TEEEAALAYD QAALSMRGSS ATLNFPLKRV  120
QESLHNMFSS DECGLLSAVA LKEAHKIRNI WKRRSKKKQQ INVIKDVLVF EDLGSDLLDE  180
LLSETESSGS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2759118362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2759118665ATERF1
3gcc_A4e-2759118665ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464424.14e-55PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8LDC82e-47ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A022S0A81e-53A0A022S0A8_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000344892e-49(Solanum tuberosum)